Techniques for specimen collection with testing females for STIs
The following information provides guidance on specimen collection in females.
Samples are taken during speculum examination.
Note: NAAT refers to Nucleic Acid Amplification Test, such as NAAT.
A Cervical screening test is taken first if due or indicated.
Method
- A cotton tipped swab is inserted into the cervical canal only 0.5 cm and
- smeared on a slide and air dried for gram stain
- placed in a transport medium for gonorrhoea culture
- a second cotton tipped swab is inserted 0.5 to 1 cm into the cervical canal and kept in place for 10 to 15 seconds and rotated 1 to 2 times for chlamydia NAAT and gonorrhoea NAAT and mycoplasma genitalium NAAT testing
- place in a transport container provided by the lab.
From the lateral vaginal wall with a cotton tipped swab:
- smeared on a slide and air dried for gram stain for bacterial vaginosis and candida
- placed in a transport medium for gonorrhoea culture and candida culture.
From the posterior fornix with a cotton tipped swab for:
- pH performed on a pH strip at the time
- wet preparation for trichomonas
- smear on to a slide and place a drop of normal saline on slide - must be read immediately
- trichomas vaginalis NAAT if indicated.
- smear on to a slide and place a drop of normal saline on slide - must be read immediately
Sample for chlamydia and gonorrhoea NAAT in asymptomatic female using cotton tipped swab and transported in a container provided by the lab.
These are taken if clinically indicated.
Proctoscopy should be performed to inspect for lumps, ulcers, pus, bleeding and specimen collection.
Swabs are taken for:
- gonorrhoea culture (plate or transport medium)
- chlamydia NAAT and gonorrhoea NAAT (dry or moistened cotton tipped swab)
- herpes simplex NAAT if indicated.
These are taken routinely in sex workers and samples are collected.
Swabs are taken from each tonsillar fossa for:
- gonorrhoea culture if suspected or NAAT positive
- chlamydia and gonorrhoea NAAT for screening.
- Dry or moist cotton tipped swabs taken from the ulcer base can be tested for herpes simplex virus (HSV) NAAT
- swabs are transported in an empty transport container or in viral culture medium
- syphilis NAAT using cotton tipped dry swab if indicated.
Can be performed if no endocervical swabs are available and samples:
- should not pass urine for at least 2 hours before the sample collection
- first 10 ml of urine is collected
- voiding within 30 minutes prior to sample collection should be considered in interpreting results
- tests for chlamydia NAAT, gonorrhoea NAAT, mycolplasma genitalium NAAT and trichomonas vagnilais NAAT as indicated.
This page was last updated 24 April 2025.