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Note: NAAT refers to Nucleic Acid Amplification Test, such as NAAT.

A Cervical screening test is taken first if due or indicated.

Method

  1. A cotton tipped swab is inserted into the cervical canal only 0.5 cm and
    1. smeared on a slide and air dried for gram stain
    2. placed in a transport medium for gonorrhoea culture
  2. a second cotton tipped swab is inserted 0.5 to 1 cm into the cervical canal and kept in place for 10 to 15 seconds and rotated 1 to 2 times for chlamydia NAAT and gonorrhoea NAAT and mycoplasma genitalium NAAT testing
  3. place in a transport container provided by the lab.

From the lateral vaginal wall with a cotton tipped swab:

  • smeared on a slide and air dried for gram stain for bacterial vaginosis and candida
  • placed in a transport medium for gonorrhoea culture and candida culture.

From the posterior fornix with a cotton tipped swab for:

  • pH performed on a pH strip at the time
  • wet preparation for trichomonas
    • smear on to a slide and place a drop of normal saline on slide - must be read immediately
      • trichomas vaginalis NAAT if indicated.

Sample for chlamydia and gonorrhoea NAAT in asymptomatic female using cotton tipped swab and transported in a container provided by the lab.

These are taken if clinically indicated.

Proctoscopy should be performed to inspect for lumps, ulcers, pus, bleeding and specimen collection.

Swabs are taken for:

  • gonorrhoea culture (plate or transport medium)
  • chlamydia NAAT and gonorrhoea NAAT (dry or moistened cotton tipped swab)
  • herpes simplex NAAT if indicated.

These are taken routinely in sex workers and samples are collected.

Swabs are taken from each tonsillar fossa for:

  • gonorrhoea culture if suspected or NAAT positive
  • chlamydia and gonorrhoea NAAT for screening.
  • Dry or moist cotton tipped swabs taken from the ulcer base can be tested for herpes simplex virus (HSV) NAAT
  • swabs are transported in an empty transport container or in viral culture medium
  • syphilis NAAT using cotton tipped dry swab if indicated.

Can be performed if no endocervical swabs are available and samples:

  • should not pass urine for at least 2 hours before the sample collection
  • first 10 ml of urine is collected
  • voiding within 30 minutes prior to sample collection should be considered in interpreting results
  • tests for chlamydia NAAT, gonorrhoea NAAT, mycolplasma genitalium NAAT and trichomonas vagnilais NAAT as indicated.

This page was last updated 24 April 2025.

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